{"$schema":"http://json-schema.org/draft-07/schema#","$id":"https://repo-prod.prod.sagebase.org/repo/v1/schema/type/registered/MC2Center-DataCatalog-12.0.8","type":"object","properties":{"doi":{"type":"string","description":"Digital Object Identifier (DOI) for citation and identification. Can be identical to Dataset Doi."},"link":{"type":"string","description":"The url where the dataset is displayed, typically on a public-facing data portal. Can be identical to Dataset Url.","not":{"type":"null"}},"title":{"type":"string","description":"The name of the dataset.","not":{"type":"null"}},"funder":{"type":"array","items":{"enum":["NIH",""]},"description":"The entity(ies) responsible for funding the data contributors."},"series":{"type":"string","description":"Data series designation (e.g., NF-OSI Processed Data).","not":{"type":"null"}},"creator":{"type":"string","description":"Organization or person that is creator of the dataset. Default is the PI of the project and/or the user who created all files in the dataset.","not":{"type":"null"}},"license":{"type":"array","items":{"enum":["CC BY-NC 3.0","CC BY 3.0","CC BY-NC 4.0","CC BY 4.0","CC BY-NC-SA 4.0","CC BY-SA 4.0",""]},"description":"The terms and conditions underwhich the data are allowed to be accessed and used. Unless information for license is clear, this should default to UNKNOWN."},"species":{"type":"array","items":{"enum":["Sheep","Trichoplax adhaerens","Zebrafish","Rabbit","Fruit Fly","unknown","Armadillo","Human Patient","Yeast","Unspecified","Multispecies","African Bush Elephant","Human Cell Line","Escherichia coli","Opossum","Cat","Cow","Not Applicable","Asian Elephant","Guinea Pig","Boar","Dog","Chicken","Mouse","Worm","Horse","Human","Rhesus monkey","Rat",""]},"description":"Species of the organism(s) from which the data were generated. Omit property if not applicable, such as for data like compounds or other non-biological data. Can be identical to Dataset Species."},"subject":{"type":"string","description":"Applicable subject term(s) for dataset cataloging; use the Library of Congress Subject Headings (LCSH) scheme."},"citation":{"type":"string","description":"Academic articles that are recommended by the data provider to be cited in addition to the dataset doi itself. Can be identical to DatasetView.PublicationView Key."},"keywords":{"type":"string","description":"Keywords associated with the dataset. Can be identical to Publication Keywords.","not":{"type":"null"}},"Component":{"type":"string","description":"Category of metadata (e.g. Tools, Publications, etc.); provide the same one for all items/rows.","not":{"type":"null"}},"Study Key":{"type":"string","description":"The unique Study_id foreign keys associated with the resource, found in the grant Study information. Used to group the resource with other components. Please provide multiple values as a comma-separated list."},"community":{"type":"string","description":"The Sage Bionetworks project or initiative with which the dataset is associated."},"accessType":{"type":"array","items":{"enum":["Controlled","Private","Anonymous","Open",""]},"description":"Access type for the dataset."},"description":{"type":"string","description":"A text description of the dataset. Can be identifical to Dataset Description."},"individuals":{"type":"string","description":"The number of participants or samples associated with the files in the dataset. Can be identical to Study Number of Participants or DSP Number of Participants."},"contributors":{"type":"string","description":"Organization(s), insitution(s), or person(s) that generated and/or deposited the data in Synapse. Can be identical to Grant Institution Name."},"GrantView Key":{"type":"string","description":"Unique GrantView_id foreign key(s) that group the resource with other components, as part of the same grant-associated collection. Please provide multiple values as a comma-separated list.","not":{"type":"null"}},"alternateName":{"type":"string","description":"An altername name that can be used for search and discovery improvement."},"datePublished":{"type":"string","description":"Date data were published/available on Synapse."},"specimenCount":{"type":"integer","description":"Number of unique specimens in the dataset. Can be equivalent to DSP Number of Samples."},"yearProcessed":{"type":"integer","description":"Year the data were processed (used with specific series only)."},"DataCatalog_id":{"type":"string","description":"A unique primary key that enables record updates using schematic.","not":{"type":"null"}},"DatasetView Key":{"type":"string","description":"Unique DatasetView_id foreign key(s) that link metadata entries as part of the same collection. Please provide multiple values as a comma-separated list."},"countryOfOrigin":{"type":"array","items":{"enum":["FJ","SG","PH","CZ","PF","PT","SZ","VN","MR","IS","MT","PL","AT","TW","AU","ST","TJ","BR","BT","CH","BH","EE","NP","SK","SO","TF","AE","IE","CA","SS","BY","GS","JO","TC","AO","US","FM","CM","HN","LT","PG","DZ","SY","NO","GG","BL","MP","MD","MS","WS","LC","BS","KM","PK","BM","AI","GA","HM","IM","KI","HK","LS","YT","AF","CG","AL","ML","SM","CF","PY","NL","GN","ES","UY","LI","MH","NZ","SB","LV","VU","ZW","BW","HU","MF","EC","MV","SX","TD","SJ","DJ","AR","VI","CO","MW","ER","ZA","PN","GT","AM","MU","NR","TL","AG","AZ","ME","CC","PW","SN","AS","GU","VA","RW","JP","KY","GB","IQ","SC","GE","GL","TM","CI","CR","GP","MN","SL","GR","NA","RU","CD","TV","GD","FR","MK","SR","ZM","SI","MA","ID","DK","BI","SV","BG","BA","TK","LA","VC","KH","KP","SD","MC","KG","TN","RE","MM","IR","KR","KZ","TT","RO","PM","LY","NF","NG","CX","GH","GY","NC","VG","BJ","IN","UG","AW","BB","EG","TG","PE","LR","NI","PR","GQ","IO","UA","NE","AX","SH","IL","MG","MY","CK","WF","FI","SA","GW","TR","YE","LK","BV","MO","MQ","EH","HR","CW","SE","CU","MZ","KW","BO","CV","BN","JE","GI","LB","BE","LU","MX","PA","FK","FO","BQ","DM","PS","JM","BD","QA","TZ","GM","ET","CN","KN","UM","OM","AQ","CL","IT","TH","UZ","DO","AD","BF","HT","VE","GF","DE","BZ","RS","CY","TO","KE","NU",""]},"description":"Origin of individuals from which data were generated. Omit if not applicable/unknown."},"visualizeDataOn":{"type":"string","description":"Links to external visualization platforms."},"dataUseModifiers":{"type":"array","items":{"enum":["Pending Annotation","DUM","NPOA","IRB","IS","COL","GSO","MOR","NMDS","PS","CC","GS","NCU","US","TS","POA","NRES","GRU","PUB","HMB","NPUNCU","NPU","DS","RTN","RS",""]},"description":"List of data use ontology (DUO) terms that are true for dataset, which describes the allowable scope and terms for data use. Omit property if not applicable/unknown."},"conditionsOfAccess":{"type":"string","description":"Additional requirements a user may need outside of Data Use Modifiers. This could include additional registration, updating profile information, joining a Synapse Team, or using specific authentication methods like 2FA or RAS. Omit property if not applicable/unknown."},"measurementTechnique":{"type":"array","items":{"enum":["Magnetic Resonance Imaging","X-Ray Diffraction","Single Cell DNA Sequencing","Migration Assay","Micropipette Adhesion Assay","In Vitro Selection","Clonality Analysis","Mammosphere Formation Assay","Sirius Red Staining","Quantitative Point Accumulation for Imaging in Nanoscale Topography","Cell-free Circulating Tumor DNA Assay","X-Ray Micro-Computed Tomography","Karyotyping","Cytochemical Stain","Von Kossa Staining","Differential Interference Contrast Microscopy","Murine Model","Stochastic Optical Reconstruction Microscopy","Dynamic Susceptibility Contrast-Enhanced Magnetic Resonance Imaging","Alcian Blue Staining Method","eCLIP-Seq","Fluorescence Imaging","Imaging","Nanowire","Methyl Binding Domain Sequencing","Artificial Intelligence","Computed Tomography","MeDIP","Single-Molecule Localization Microscopy","Energy-Dispersive X-Ray Spectroscopy","RNAi Screen","Cell Culture","Phylogenetic Analysis","Field-Emission Scanning Electron Microscopy","Single-Cell Barcode Chip","RT-qPCR","Atomic Absorption Spectroscopy","Fluorescence Correlation Spectroscopy","Immunofluorescent Staining Method","Nanopatterning","Single-Cell TCR Sequencing","In Vitro Model","Lattice Light Sheet Microscopy","Cell Fractionation","Gene Set Enrichment Analysis","Statistical Modeling","Multiplexed Immunofluorescence","Affinity Purification Mass Spectrometry","Point Accumulation for Imaging in Nanoscale Topography","Co-culture Assay","Confocal Reflectance Quantitative Phase Microscopy","Scanning Electron Microscopy","qPCR","Electrospray Ionization Time-of-Flight Mass Spectrometry","Co-Immunoprecipitation Mass Spectrometry","Microscopy","Proximity Ligation Assay","Direct Long-Read RNA Sequencing","Cell Cycle Assay","3D Bioprinting","ChIA-PET","Soft Agar Assay","Thermal Shift Assay","Survival Analysis","X-Ray Crystallography","Electrophoretic Mobility Shift Assay","DNase-Seq","Southern Blotting","Thin-Layer Chromatography","RNA Sequencing","Light Sheet Microscopy","Scratch Assay","Electron Paramagnetic Resonance Spectroscopy","CITE-seq","Small-Angle X-ray Scattering","Global Chromatin Profiling","Tissue Microarray","Single Nucleus RNA-Sequencing","Dark Field Microscopy","Fluorescence Microscopy","Virus Plaque Assay","Suspended Microchannel Resonator","Epidemiological Method","Colorimetric Cell Viability Assay","Dual-Luciferase Reporter Assay","MULTI-Seq","ImmunoFISH","DBiT-Seq","Magnetic Twisting Cytometry","Western Blotting","Atomic Force Microscopy","Cytotoxicity Assay","Multiplexed Ion Beam Imaging","Photolithography","Positron Emission Tomography","RT-PCR","Total Internal Reflection Fluorescence Microscopy","Bicinchoninic Acid Assay","Mass Spectrometry","Efferocytosis Assay","Dynamic Force Spectroscopy","Computational Tool","Clinical Study","5C","Modeling","Optical Stretcher","Cross-Linking Mass Spectrometry","Surveyor Nuclease Assay","Micropipette Aspiration","CODEX","Confocal Microscopy","Targeted Error Correction Sequencing","Autoradiography","Multi-Isotope Mass Spectrometry","Raman Spectroscopy","3' RNA-seq","siRNA","10x Multiome","DRIP-seq","Transmission Electron Microscopy","Whole Exome Sequencing","In Vitro Cell Killing Assay","Chemiluminescent Assay","Tiling Array","Transwell Assay","Forster Resonance Energy Transfer","In Situ Hybridization","Multiparametric Magnetic Resonance Imaging","MNase-Seq","Nanopore Sequencing","Viral Transduction","Immunoprecipitation","Diffusion Weighted Imaging","High Throughput Screening","cDNA Array","DNA Sequencing","CRISPR","Bio-Layer Interferometry","Gene Silencing","Trichrome Staining Method","Second-Harmonic Imaging Microscopy","Phagocytosis Assay","Cell Viability Assay","Whole Genome Bisulfite Sequencing","HiChIP","Bisulfite Sequencing","mRNA Sequencing","Gelatin Zymography","Targeted Transcriptome Sequencing","Optical Tweezers","Label-free Protein Quantification by LC/MS","Time Lapse Microscopy","Electron Diffraction","Flow Cytometry","Hematoxylin and Eosin Staining Method","Comparative Genomic Hybridization","smRNA-seq","Targeted Genome Sequencing","ChIP-qPCR assay","shRNA","ATP Bioluminescence Assay","Bioluminescence Imaging","Bioelectrochemical Analysis","Luciferase Reporter Assay","FAIRE-Seq","Isothermal Titration Calorimetry","RIP","Not Applicable","MEMA Cell Growth Assay","HL-Chip","smFISH","Tandem Mass Spectrometry","Allograft","Dynamic Light Scattering","HPLC-MSMS","Apoptosis Assay","PlateSeq","Single Cell ATAC-Seq","Enzyme Activity Assay","Multiphoton Microscopy","TAB-Seq","16S Ribosomal Gene Sequencing Assay","Antitumor Drug Screening Assay","Metastatic Colonization Assay","Immunoassay","Nuclear Magnetic Resonance","Drop-Seq","Structural Variant Analysis","Dye Endocytosis Assay","Microcontact Printing","Spectroscopy","scCGI-seq","CUT&Tag-Sequencing","Fluorescent Antibody Procedure","Target Engagement Assay","TCR Sequencing","Microfluidics","10-cell RNA Sequencing","Stimulated Emission Depletion Microscopy","Single Molecule Forster Resonance Energy Transfer","Optical Mapping","High-Content Screen","Chimeric Antigen Receptor T-Cell Therapy","Interference Reflection Microscopy","Global Run-On Sequencing","Magnetic Tweezers","RAS Protein Family Activation Assay","3D ATAC-PALM","Ribosomal P Protein Antibody Measurement","Single Nucleotide Polymorphism Array","MeRIP-Seq","ELISA","Focused Ion Beam Scanning Electron Microscopy","Molecular Simulations","Gas Chromatography Mass Spectrometry","Picrosirius Staining","Rheometry","Brillouin Microscopy","Patient Derived Xenograft","Brightfield Microscopy","Monolayer Stress Microscopy","Immunohistochemistry Staining Method","Tuba-Seq","Metabolite Profiling Assay","scSLAM-seq","Organoid","PCR","Tissue Engineering","Cell-spreading Assay","Fluorescent Cell Barcoding","Traction Force Microscopy","Cytometric Bead Array Assay","Nested PCR","Reverse-Phase High-Performance liquid Chromatography","Enzyme-Linked Immunospot Assay","Image Cytometry","Cell Adhesion Assay","Fluorescence Activated Cell Sorting","Visium Spatial Gene Expression","PET-CT","Reduced Representation Bisulfite Sequencing","Droplet Digital PCR","Single-Cell BCR Sequencing","UV Photocrosslinking","scNT-Seq","Single Cell Gel Electrophoresis","Data Integration","SDS-PAGE","In Vivo Bioluminescence","Photoacoustic Imaging","Liquid Chromatography Mass Spectrometry","NanoString Digital Spatial Profiling","Time-Correlated Single Photon Counting","Fluorescent In Situ Sequencing","Genotyping","ChIP-Seq","Intravital Microscopy","4C","3C-qPCR","seqFISH","Widefield Fluorescence Microscopy","Amplicon Sequencing","Low-Vacuum Scanning Electron Microscopy","Cell Proliferation Assay","FISH","Hydrogels","Synthesis","Binding Assay","In Vitro Translation","Tandem Mass Tagging","Fourier-Transform Infrared Spectroscopy","Multi-Angle Light Scattering","Mathematical Modeling","Transcription profiling by NanoString","Size Exclusion Chromatography","Reporter Gene Assay","CLIP-qPCR","Chemotaxis Assay","Xenograft","Atomic Absorption Spectrophotometry","Optical Coherence Tomography","Quantitative Multiplex Immunofluorescence","RIP-Seq","QFISH","Mint-ChIP","Scanning Angle Interference Microscopy","TRAP Staining","Collision-Induced Dissociation","Micro-computed Tomography","Partial Wave Spectroscopy","snRNA-seq","Computational Modeling","Proteomics Assay","Hi-C","Inductively-Coupled Plasma Mass Spectrometry","L1000 mRNA Profiling Assay","Cryo-Electron Tomography","Angiogenesis Assay","Cross-Linking Immunoprecipitation High-throughput Sequencing","Desorption Electrospray Ionization","Immunocytochemistry","MicroRNA Sequencing","Optogenetic Assay","Pending Annotation","Hydrophilic Interaction Chromatography","Deep Learning","TUNEL assay","Fourier Transform Ion Cyclotron Resonance Mass Spectrometry","Nm-seq","Dynamic Contrast-Enhanced Magnetic Resonance Imaging","CellTiter-Glo Luminescent Cell Viability Assay","Pull-Down Assay","Luminescent Cell Viability Assay","Single Cell RNA-Sequencing","Unspecified","MicroRNA Expression Array","Nano-hmC-Seal","UPLC-MSMS","Immobilized Metal Affinity Chromatography","Knife-Edge Scanning Microscopy","Multiscale Light Sheet Microscopy","Fluorescence Lifetime Imaging Microscopy","Methylation-Specific PCR","Imaging Mass Cytometry","Differential Scanning Fluorimetry","Graphite Furnace Atomic Absorption Spectrometry","Cyclic Immunofluorescence","3C","Mass Cytometry","MALDI-TOF Mass Spectrometry","3D Cell Culture","Magnetically Activated Cell Sorting","Single Cell Cytokine Detection Chip Assay","Electron Microscopy","Paraquat Survival Assay","Questionnaire","Optical Emission Spectroscopy","CASFISH","TIRF Microscopy","Synthetic Genetic Array","CUT&RUN","Synaptophysin Staining Method","Multiplexed Immunohistochemistry","Permeability Assay","Super-Resolution Microscopy","Invasion Assay","Dideoxy Chain Termination DNA Sequencing","Targeted Therapy Agent","Macrophage Polarization Assay","Cytokine Expression Profile","Gene Ontology Enrichment Analysis","ChIP-PCR","Single-Molecule Tracking","Liquid Chromatography/Tandem Mass Spectrometry","Barcode-Seq","DNA Gene-Expression Microarray","Circular Dichroism Spectroscopy","DNA Methylation Array","Stimulated Raman Scattering","Immunotherapy","Co-Immunoprecipitation","Plasmid Construction","Cryo-Electron Microscopy","In-Cell Western Assay","Fluorescence Recovery After Photo-Bleaching","Multiplexed Error-Robust Fluorescence In Situ Hybridization","Precision Run-On Sequencing","Endotoxin Assay","Whole Genome Sequencing","Ultrasound Imaging","Wound-Healing Assay","Shotgun Mass Spectrometry","Next Generation Sequencing","Ribo-Seq","Reverse Phase Protein Array","Surface Plasmon Resonance","Vibrational Spectroscopy","ATAC-Seq","Cerenkov Luminescence Imaging","Deep Mutational Scanning","Human Induced Pluripotent Stem Cell-derived Cardiomyocytes Culture",""]},"description":"Assay used to generate original data. Omit if not applicable (e.g. for curated dataset such as a list compounds from a database or text extracted from Wikipedia). Can be identical to Dataset Assay."},"includedInDataCatalog":{"type":"string","description":"Link(s) to known data catalog(s) the dataset is included in."},"croissant_s3_file_object":{"type":"string","description":"A Synapse url where the croissant file associated with this dataset is stored."}},"title":"MC2_DataCatalog_v12.0.0","required":["keywords","DataCatalog_id","title","Component","creator"]}